Python tips

python -m cProfile encode-linkage --vcf 19.vcf.gz --tfam 19.tfam --vanilla -j4 > profile.log
cat profile.log | grep -v -e 'argparse\|time\|posix\|threading\|urllib' | sort -k4 -g -r | head -50

pip install line_profiler
kernprof -l script_to_profile.py
python -m line_profiler script_to_profile.py.lprof

pip install memory_profiler
python -m memory_profiler script_to_profile.py